Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs11860968 chr16:1496613 T/C 3.55E-7 367 19.33 22.33 1.87 KM Plot
LIHC rs11958074 chr5:145702662 C/G 6.12E-5 351 19.7 21.2 10.5 KM Plot
LIHC rs11998046 chr8:21411631 C/T 4.3E-13 368 0.63 26.13 18.77 KM Plot
LIHC rs12263233 chr10:118452921 C/T 8.26E-6 368 12.7 21.2 19.43 KM Plot
LIHC rs12328274 chr2:37154468 T/C 1.5E-5 364 20.5 12.17 8.73 KM Plot
LIHC rs12434259 chr14:73424409 G/A 1.47E-6 365 20.6 13.03 8.73 KM Plot
LIHC rs12436610 chr14:73409957 G/C 2.52E-6 363 20.7 13.17 8.73 KM Plot
LIHC rs12441483 chr15:40353416 T/C 3.45E-5 363 16.98 21.78 17.83 KM Plot
LIHC rs12469095 chr2:109529701 G/A 4.35E-5 353 13.63 21.53 19.8 KM Plot
LIHC rs12508133 chr4:20853860 C/T 8.75E-7 368 20.4 20.8 10.5 KM Plot
LIHC rs12530832 chr7:90311819 T/C 9.63E-6 363 14.32 18.8 20.27 KM Plot
LIHC rs12616770 chr2:37161026 G/A 1.1E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs12624290 chr2:37119351 C/T 1.32E-5 368 20.27 14.57 8.73 KM Plot
LIHC rs12790708 chr11:107162153 G/A 9.05E-6 366 19.87 18.83 1.87 KM Plot
LIHC rs12808887 chr11:107161907 C/T 9.05E-6 366 19.87 18.83 1.87 KM Plot